PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009785479.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 731aa    MW: 84317.5 Da    PI: 7.1512
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009785479.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR184.61.5e-2628115191
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                     +fY+eYAk++GF + k +s++s+ ++e+++++f C ++g++++++++     ++r++ ++gCka+++vk+++ +gkw+++++++eHnHel p
  XP_009785479.1  28 EFYKEYAKSAGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRRSsNGKWYIHSFVKEHNHELLP 115
                     6****************************************999877....9********************9****************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.6E-2428115IPR004330FAR1 DNA binding domain
PfamPF105518.1E-23228320IPR018289MULE transposase domain
PROSITE profilePS5096610.447508544IPR007527Zinc finger, SWIM-type
PfamPF044347.5E-8518542IPR007527Zinc finger, SWIM-type
SMARTSM005752.8E-7519546IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    Send to blast
MESTVATENN NLEPRDDMEF DSHDAAYEFY KEYAKSAGFG TAKLSSRRSR ASKEFIDAKF  60
SCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRSSNGKW YIHSFVKEHN HELLPAQVHF  120
FRSHRNVDPL KSDAKVRRKK MLASVSKQYG AYQFSGNLEN LFRNQHDRGR SLTLEEGGAQ  180
VLLEFLVQMQ EENPKFFYSV DLNEEHRMRN VFWVDAKGMD NYSNFGDVVS FDTTYFTNKY  240
KIPLVLFIGA NHHVQPTLLG CALIADETVH TFIWLMRTWC LAMGGRGPKI LLSDQNDNIK  300
AAVGAIFPDT GHYFSLWSIL EKIPRHLEYL SLWHDTFMAK FTKCIYRSWT EEQYEHRWWK  360
LIEKFSLRED EWVQSLYENR KLWVPAFMRD VSFASLSTAS RSESVNSFFD KYIQSETSLR  420
GFIGQHKLIL EDWYEEEAKA NFDAWHEMPE LKSPSPFEKQ MLLIYTHEIF KKFQVEVLGA  480
AACHLKKETE DGTSITYAVK DFDANQDFMV EWDAPRSDIY CSCHSFEYKG YLCRHAIVVL  540
QMSGVFNIPS KYILQRWTNA AMSRHSISER LEDVQAKVRR YNDLCRRAII LGEEGSLTQE  600
SYNIAVGAIK EALKQCATVN VTFEANLRSG SCATLAIQGV NEVCQGNSLA ARELMPYSRA  660
AQTSKGSKRA DPGKERENND NTSNKKGKVT LEPEIPNGAQ GVFHQMELLE KFILNIYLMH  720
LVVDELEGYA W
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009785479.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X2
SwissprotQ6NQJ70.0FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBLK4BMW20.0K4BMW2_SOLLC; Uncharacterized protein
STRINGSolyc03g121630.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.10.0FAR1-related sequence 4